PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400051153
Common NameLOC102582592
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 313aa    MW: 34028.1 Da    PI: 10.1632
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400051153genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32.1e-30234292259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D+++WrKYGqK++kgs +pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeH h+
  PGSC0003DMP400051153 234 ADEFSWRKYGQKPIKGSAYPRGYYKCSSLrGCPARKHVERAMDDPTMLIVTYEGEHCHK 292
                           69*************************998***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.6E-13185231IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.8E-32221293IPR003657WRKY domain
PROSITE profilePS5081127.841228294IPR003657WRKY domain
SuperFamilySSF1182901.22E-25231292IPR003657WRKY domain
SMARTSM007742.4E-36233293IPR003657WRKY domain
PfamPF031069.4E-26235292IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAVVSKMTEN FAVQEAASAG LKSMEHLIRL VSHEPVQVDC REIADFTVSK FKKVISILDR  60
TGHARFRRGP VQAPVPVYPD SFTTLSLAPS LSFAPAKETP AVQLQTALTL DFTKPSVERP  120
IGNSSAFTAF AVKSKEVLMA TPTPTNSSSF MSSITGEATV SNGKQASSSM LLLPAQAGNL  180
PITGKRCREH EQSDDISGSK STGSGKCHCK KRKSRDKKVM RIAAISSRIA DIPADEFSWR  240
KYGQKPIKGS AYPRGYYKCS SLRGCPARKH VERAMDDPTM LIVTYEGEHC HKPVAMHGNN  300
SQMVNFGSME KK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-21221291271WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00464DAPTransfer from AT4G31550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0145010.0BT014501.1 Lycopersicon esculentum clone 133872F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342466.10.0PREDICTED: probable WRKY transcription factor 17
SwissprotQ9SV157e-98WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBLM1CVB70.0M1CVB7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000755310.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31452250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.27e-90WRKY DNA-binding protein 11
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]